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Website title: Latest research | eLife

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PPIscreenML is a method for structure-based screening of protein-protein interactions using AlphaFold
Protein-protein interactions underlie nearly all cellular processes. With the advent of protein structure prediction methods such as AlphaFold2 (AF2), models of specific protein pairs can be built extremely accurately in most cases. However, determining the relevance of a given protein pair remains an open question. It is presently unclear how to use best structure-based tools t...

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Single-cell co-mapping reveals relationship between chromatin state and gene expression in early zebrafish development
Establishing a cell type-specific chromatin landscape is crucial for the maintenance of cell identity during embryonic development. However, our knowledge of how this landscape is set during vertebrate embryogenesis has been limited, due to the lack of methods to jointly detect chromatin modifications and gene expression in the same cell. Here we present a multimodal measurement...

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Brain-wide mapping of layer-specific functional connectivity in the human cortex at 3T using draining-vein-suppresse...
Layer-dependent functional magnetic resonance imaging (fMRI) is a promising yet challenging approach for investigating layer-specific functional connectivity (FC). Achieving a brain-wide mapping of layer-specific FC requires several technical advancements, including sub-millimeter spatial resolution, sufficient temporal resolution, functional sensitivity, global brain coverage, ...

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Antibiotic potentiation and inhibition of cross-resistance in pathogens associated with cystic fibrosis
Critical Gram-negative pathogens, like Pseudomonas, Stenotrophomonas, and Burkholderia, are now resistant to most antibiotics. Complex resistance profiles, together with synergistic interactions between these organisms, increase the likelihood of treatment failure in distinct infection settings, for example in the lungs of cystic fibrosis (CF) patients. Here...

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Prior cocaine use disrupts identification of hidden states by single units and neural ensembles in orbitofrontal cortex
The orbitofrontal cortex (OFC) is critical to identifying task structure and to generalizing appropriately across task states with similar underlying or hidden causes. This capability is at the heart of OFCs proposed role in a network responsible for cognitive mapping, and its loss can explain many deficits associated with OFC damage or inactivation. Substance use disorder is de...

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